Index

A

AlphaPeptLoader (class in alphastats.loader.AlphaPeptLoader) alphastats.DataSet module alphastats.loader.AlphaPeptLoader module alphastats.loader.DIANNLoader module alphastats.loader.FragPipeLoader module

alphastats.loader.MaxQuantLoader module alphastats.loader.mzTabLoader module alphastats.loader.SpectronautLoader module ancova() (DataSet method) anova() (DataSet method)

B

batch_correction() (DataSet method)

C

create_matrix() (DataSet method)

D

DataSet (class in alphastats.DataSet)

DIANNLoader (class in alphastats.loader.DIANNLoader) diff_expression_analysis() (DataSet method)

F

FragPipeLoader (class in alphastats.loader.FragPipeLoader)

G

go_abundance_correction() (DataSet method) go_characterize_foreground() (DataSet method)

go_compare_samples() (DataSet method) go_genome() (DataSet method)

L

load_metadata() (DataSet method)

M

MaxQuantLoader (class in alphastats.loader.MaxQuantLoader) module alphastats.DataSet alphastats.loader.AlphaPeptLoader alphastats.loader.DIANNLoader alphastats.loader.FragPipeLoader alphastats.loader.MaxQuantLoader alphastats.loader.mzTabLoader alphastats.loader.SpectronautLoader

mzTabLoader (class in alphastats.loader.mzTabLoader)

O

overview() (DataSet method)

P

plot_clustermap() (DataSet method) plot_correlation_matrix() (DataSet method) plot_dendrogram() (DataSet method) plot_imputed_values() (DataSet method) plot_intensity() (DataSet method) plot_pca() (DataSet method)

plot_sampledistribution() (DataSet method) plot_samplehistograms() (DataSet method) plot_tsne() (DataSet method) plot_umap() (DataSet method) plot_volcano() (DataSet method) preprocess() (DataSet method) preprocess_print_info() (DataSet method)

R

reset_preprocessing() (DataSet method)

S

SpectronautLoader (class in alphastats.loader.SpectronautLoader)

T

tukey_test() (DataSet method)